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CleanEx Tutorial



Using CleanEx : some examples

Example 1 Gene entry with selected datasets. Datasets have been selected with the following MeSH terms : Breast AND Neoplasm Metastasis. Gene is the "TP53 regulating kinase"
Example 2 Targets selection page for TP53RK
Example 3 Targets retrieval page for TP53RK. Selected targets are Affymetrix, MPSS and Clones
Example 4 Retrieval Form for promoter sequence of gene TP53RK
Example 5 Results of the sequence retrieval system. Options were put to 100 5' nucleotides and 100 3' nucleotides (from the TSS)
Example 6 Expression viewer for TP53RK feature found in dataset GSE1992
Example 7 Selection page to extract numerical data from the GSE1059 dataset
Example 8 Data extraction page. Selected field to extract is "VALUE2" (given by the authors). Selected experiments are "Human myometrial cells stably-transfected with the ATF2-small gene".
Example 9 Targets batch search portal
Example 10 Retrieving two experiments pools from heterogeneous datasets corresponing to specific criteria. First pool is : "humans AND colon AND neoplasms BUT NOT neoplasm metastasis BUT NOT cell line". Second pool is :"humans AND colon AND neoplasms AND neoplasm metastasis BUT NOT cell line".
Example 11 Data extraction of the two predefined pools across different experiments. See example above for details on the two pools characteristics